Bioconductor DNA methylation

Showing : DNA methylation • reset

votes

1.1k

views

minfi cell proportion estimateCellCounts DNA Methylation

4.7 years ago grayapply2009 • 0

vote

replies

2.3k

views

normalization DNA methylation WGCNA

updated 5.4 years ago by Peter Langfelder ★ 3.0k • written 5.4 years ago by enora.fremy • 0

vote

replies

1.1k

views

medips medip-seq dna methylation dmr analysis

updated 6.0 years ago by Lukas Chavez ▴ 570 • written 6.0 years ago by mtefit • 0

votes

replies

1.8k

views

R gdc rna-seq dna methylation

updated 6.1 years ago by Sean Davis 21k • written 6.1 years ago by RichardJActon ▴ 50

vote

replies

1.4k

views

minfi normalization outliers dna methylation densityplot

6.3 years ago peter.fransquet • 0

votes

replies

868

views

differential variability dna methylation iEVORA DVP

6.6 years ago poojitha.stemcell ▴ 10

votes

replies

1.2k

views

rnbeads methylation methylationepic dna methylation

6.8 years ago gabrielrfries • 0

votes

1.2k

views

dna methylation biseq

updated 6.9 years ago by Gordon Smyth 51k • written 6.9 years ago by ahmad.moousavi • 0

votes

replies

2.0k

views

tcgabiolinks dna methylation

updated 7.0 years ago by Marcel Ramos 700 • written 7.0 years ago by michaelwxf2012 • 0

vote

1.8k

views

dna methylation illimina 450k methylation beta M significance

updated 7.2 years ago by James W. MacDonald 67k • written 7.2 years ago by skids121 • 0

votes

replies

1.4k

views

CNV minfi preprocessing dna methylation

7.7 years ago Thomas • 0

vote

replies

1.1k

views

microarray HM450 dna methylation cohcap

updated 7.8 years ago by James W. MacDonald 67k • written 7.8 years ago by poojitha.stemcell ▴ 10

votes

1.3k

views

minfi bumphunter DNA methylation illumina450k

updated 8.4 years ago by James W. MacDonald 67k • written 8.4 years ago by fleur_p90 • 0

13 results • Page 1 of 1

Recent ...

Replies

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Comment: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…

Votes

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

Awards • All

Popular Question to alexandre.blais ▴ 50