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DNA methylation
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0
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964
views
Estimate cell proportion from beta values using minfi estimateCellCounts?
minfi
cell proportion
estimateCellCounts
DNA Methylation
4.3 years ago
grayapply2009
• 0
1
vote
2
replies
1.9k
views
WGCNA on methylation data
normalization
DNA methylation
WGCNA
updated 5.0 years ago by
Peter Langfelder
★ 3.0k • written 5.1 years ago by
enora.fremy
• 0
1
vote
2
replies
1.0k
views
Comparing more than 2 experimental groups with MEDIPS?
medips
medip-seq
dna methylation
dmr analysis
updated 5.6 years ago by
Lukas Chavez
▴ 570 • written 5.6 years ago by
mtefit
• 0
7
votes
7
replies
1.7k
views
Using GenomicDataCommons R package to identify cases with both DNA methylation and gene expression data
R
gdc
rna-seq
dna methylation
updated 5.7 years ago by
Sean Davis
21k • written 5.7 years ago by
RichardJActon
▴ 50
1
vote
2
replies
1.2k
views
Odd Sample after SWAN normalisation, DNA methylation analysis EPIC array
minfi
normalization
outliers
dna methylation
densityplot
6.0 years ago
peter.fransquet
• 0
0
votes
0
replies
776
views
iEVORA wrapping up error
differential variability
dna methylation
iEVORA
DVP
6.2 years ago
poojitha.stemcell
▴ 10
0
votes
0
replies
1.1k
views
differential methylation analysis with RnBeads
rnbeads
methylation
methylationepic
dna methylation
6.4 years ago
gabrielrfries
• 0
0
votes
1
reply
1.1k
views
Problem in working with BiSeq - BSraw
dna methylation
biseq
updated 6.5 years ago by
Gordon Smyth
51k • written 6.5 years ago by
ahmad.moousavi
• 0
2
votes
5
replies
1.8k
views
Error when prepare the TCGAdata
tcgabiolinks
dna methylation
updated 6.6 years ago by
Marcel Ramos
700 • written 6.6 years ago by
michaelwxf2012
• 0
1
vote
1
reply
1.6k
views
Beta Value Analysis - DNA Methylation Dataset
dna methylation
illimina 450k methylation
beta
M
significance
updated 6.8 years ago by
James W. MacDonald
66k • written 6.8 years ago by
skids121
• 0
0
votes
0
replies
1.2k
views
DNA methylation 450k data - minfi - preprocessFunnorm - CNV cases vs non-CNV controls
CNV
minfi
preprocessing
dna methylation
7.3 years ago
Thomas
• 0
1
vote
2
replies
1.0k
views
Correlating DNA methylation and Illumina gene expression microarray data
microarray
HM450
dna methylation
cohcap
updated 7.5 years ago by
James W. MacDonald
66k • written 7.5 years ago by
poojitha.stemcell
▴ 10
0
votes
1
reply
1.2k
views
error when using bumphunter package with illumina 450k data
minfi
bumphunter
DNA methylation
illumina450k
updated 8.1 years ago by
James W. MacDonald
66k • written 8.1 years ago by
fleur_p90
• 0
13 results • Page
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Replies
Comment: limma comparison for small sample size and how to get covariance matrix
by
Gordon Smyth
51k
Your MDS plot is better than before, but you are still not following the recommendation for making for making such plots given in the limma…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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